YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13476189, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.95
Transmembrane Helix	43	63	0.89
Non-Cytoplasmic	64	70	0.77
Transmembrane Helix	71	90	0.87
Cytoplasmic	91	124	0.84
Transmembrane Helix	125	143	0.87
Non-Cytoplasmic	144	147	0.71
Transmembrane Helix	148	166	0.92
Cytoplasmic	167	173	0.76
Transmembrane Helix	174	193	0.91
Non-Cytoplasmic	194	199	0.77
Transmembrane Helix	200	218	0.76
Cytoplasmic	219	241	0.70
Transmembrane Helix	242	264	0.76
Non-Cytoplasmic	265	267	0.44
Transmembrane Helix	268	287	0.62
Cytoplasmic	288	304	0.66
Transmembrane Helix	305	323	0.94
Non-Cytoplasmic	324	327	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPIQSKAAQ GRVADAPNGH WVYRVLPRSV WPYAQLARWD RPIGWQLLLW PCWWSAALAA  60
   61 SAYPRPGDPL LSLLPAPLYL VLFLVGAIAM RGAGCTYNDI VDENIDNQVD RTRSRPLPSG 120
  121 QTTRRRAWLF LVLQALVGLA VLLQFNSFAI LLGICSLAIV AIYPFMKRIT NWPQLFLGLA 180
  181 FSWGALMGWA VEFGDLDGPA IMLYIGSILW VIGYDTIYAH QDKEDDAIVG VRSTARLFGD 240
  241 NTKSWLAGLY GGTLICFAIA FASAQAPVVA LAGLIAAGAH MARQIAVLDI NDPDQCLRLF 300
  301 RSNNQVGWLI FLGLIGGALW VALKPLV