YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13475660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	37	0.94
Non-Cytoplasmic	38	43	0.71
Transmembrane Helix	44	64	0.92
Cytoplasmic	65	79	0.89
Transmembrane Helix	80	102	0.90
Non-Cytoplasmic	103	110	0.81
Transmembrane Helix	111	134	0.87
Cytoplasmic	135	147	0.68
Transmembrane Helix	148	169	0.85
Non-Cytoplasmic	170	176	0.74
Transmembrane Helix	177	195	0.91
Cytoplasmic	196	215	0.83
Transmembrane Helix	216	236	0.91
Non-Cytoplasmic	237	242	0.79
Transmembrane Helix	243	265	0.87
Cytoplasmic	266	290	0.80
Transmembrane Helix	291	313	0.81
Non-Cytoplasmic	314	347	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKTASPLW SEHLMRRFLP DTFLILLLCT VALASLAPAT GTFAGWFAIA TNLAVALLFF  60
   61 LHGARLSRDV VVAGLMHWRL HLVILLTTFG LFPLLGLALG YLPASILPKP LYLGILFLCV 120
  121 LPSTVQSSIA FTSIAGGNVP AAICSASASN IFGMFLTPLL VGLLFSIGGH SGFSWDAVSQ 180
  181 ILLQLLLPFA LGQLLEPRIG NWIRSRKTLL MPVDRGSILM VVYLAFSTAV AEGLWHMFSL 240
  241 RDIAVVVVAD MLLLGLVLLL TTYGSRLLGF DRADQITITF CGSKKSLASG VPMANVIFAG 300
  301 QGVGAIVLPL MLFHQIQLMV CAMIAQKYAK AAHRPAVLQA EPTASVA