YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14025620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAAGRNSP PQTGQGEKTY MLTPLAPSVK RAPRKTLFAK PYVQVLVAIL LGVAVGHFYP  60
   61 QIGENLKPLG DAFIKLVKMI IAPVIFLTVS TGIAGMSDLQ KVGRVAGKAM VYFVTFSTLA 120
  121 LIVGLIVGNV IQPGAGLNID LTSLDVQAVN GYASKAHEQS VTGFLMNMIP TTIVGAFVEG 180
  181 DILQVLFFSV LFGIALAMVG ESGKSVLSFL QDLTAPVFKL VGILMKAAPI GAFGAMAFTI 240
  241 GKYGIGSVAN LAMLVGTFYL TAFLFVFGVL GAVCRYNGFS IFSLIRYIKE ELLLVLGTSS 300
  301 SEAALPSLME KMEKAGAKRS VVGLVIPTGY SFNLDGTNIY MTLAALFIAQ ATNTDLSVGD 360
  361 QVLLLLVAML SSKGAAGVTG AGFVTLAATL SVVPAVPVAG MALILGVDRF MSECRALTNL 420
  421 VGNAVASLVV ARWEGELDQA QLKAAFCGHQ PAETSAGQPL ITPAPSNSAA SLPVESPGWS 480
  481 QTPDDRAAGS KQTLAGR

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	59	0.90
Non-Cytoplasmic	60	75	0.87
Transmembrane Helix	76	97	0.88
Cytoplasmic	98	108	0.86
Transmembrane Helix	109	131	0.90
Non-Cytoplasmic	132	181	0.90
Transmembrane Helix	182	200	0.90
Cytoplasmic	201	219	0.78
Transmembrane Helix	220	240	0.89
Non-Cytoplasmic	241	254	0.73
Transmembrane Helix	255	279	0.84
Cytoplasmic	280	328	0.84
Transmembrane Helix	329	349	0.44
Non-Cytoplasmic	350	382	0.51
Transmembrane Helix	383	407	0.84
Cytoplasmic	408	497	0.78