YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14025386, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKADAVKRR APAKTRRPPV GASPGTLIAD PAARRSELRL TLISPEKFKT IDNASIDDLN  60
   61 VHCDRWPVVW LDCTGLANIP LIEEIGRIFN LHPLALEDVV NTDQRPKVDF FEDHAFVVVR 120
  121 MIDDVTAHRY EQIAVFFGKN FVVTFQEREG DPFDPVRKRI GSSAPNRLRT RGADYLAYAL 180
  181 IDAIVDSYFP PVEAAGDQVD GIEDEMLHST HKHQMRQLHE LRRDANVLKG VLWPMRDALA 240
  241 TLIRNDVPYV KAETKVFLND TLDHSLRLIE LVETQRDMLT GLIEMHLSLS QARTNDVISY 300
  301 LTIVSVIFMP LTFLVGVWGM NFSPDASPWN MPELRSYYGY PAALVFMLLV AIGLIAFFKW 360
  361 KKWL

Type	Start	End	Confidence
Cytoplasmic	1	296	0.93
Transmembrane Helix	297	319	0.92
Non-Cytoplasmic	320	337	0.86
Transmembrane Helix	338	358	0.96
Cytoplasmic	359	364	0.79