YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13474214, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQTRKLGTE LNVYPVGLGC MGMSFAYGGQ PEAEAISTLH RAVEIGVNFF DTAEVYGPYE  60
   61 NEILLGKALK SMRDKVTIAT KFGFKILEEG TGLDRMAGVD SRPEHVKAVA EASLKRLGTD 120
  121 VIDLYYQHRV DPNVPIEDTV GAMAELVREG KVRALGLSEA SAATIRRAHA VHPIAAVQSE 180
  181 YSLWTRDPEE EVFAVCRELG IGFVPYSPLG RGLLTGTIAK PETLDDGDWR RTLPRFQAEA 240
  241 MEANAKVIAT LETMAAEKGV TSAQLALAWV LHQGDFIVPI PGARKIRHLE QNTAAAAIEL 300
  301 SAAEVAAIGD ALSPDKVMGK RYTEELLALV NG

Type	Start	End	Confidence
Cytoplasmic	1	10	0.55
Transmembrane Helix	11	29	0.58
Non-Cytoplasmic	30	332	0.99