YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATKA_RHILO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.55
Transmembrane Helix	6	28	0.84
Non-Cytoplasmic	29	62	0.54
Transmembrane Helix	63	84	0.92
Cytoplasmic	85	92	0.48
Transmembrane Helix	93	114	0.49
Non-Cytoplasmic	115	136	0.88
Transmembrane Helix	137	159	0.90
Cytoplasmic	160	176	0.93
Transmembrane Helix	177	197	0.94
Non-Cytoplasmic	198	254	0.84
Transmembrane Helix	255	275	0.91
Cytoplasmic	276	284	0.65
Transmembrane Helix	285	307	0.92
Non-Cytoplasmic	308	329	0.71
Transmembrane Helix	330	350	0.91
Cytoplasmic	351	356	0.59
Transmembrane Helix	357	376	0.69
Non-Cytoplasmic	377	380	0.65
Transmembrane Helix	381	402	0.90
Cytoplasmic	403	420	0.90
Transmembrane Helix	421	446	0.87
Non-Cytoplasmic	447	485	0.67
Transmembrane Helix	486	512	0.80
Cytoplasmic	513	528	0.51
Transmembrane Helix	529	552	0.92
Non-Cytoplasmic	553	567	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNGWIQIL VFCGIIGLLT KPLGFYMHRV FNGDRTPLSP IFGPLERGLY RICGTSEREE  60
   61 QHWTAYAVAL LLFNLAGFLV LYALQRLQGS LPYNPAGMGA VDPALAFNTA ASFVTNTNWQ 120
  121 NYGGESTMSY LLQMAGLTVQ NFVSAATGIA IAIALIRGFA RASGKSIGNF WVDMTRCTLY 180
  181 VLLPLCIVLT LVYVWLGIPQ TLGPYVDATT LEGAKQTIAL GPVASQVAIK MLGTNGGGFF 240
  241 NANAAHPFEN PDAISNLIQM VTIFALGAAL TNVFGRMVGN QRQGWAILAS MGALFIAGVA 300
  301 VCYWAEAAGN PLVHALGLDG GNMEGKETRF GIALSALFAV ITTAASCGAV NAMHDSFTAL 360
  361 GGMIPLINMQ LGEVIVGGVG AGFYGILMFI VVAVFVAGLM VGRTPEYLGK KIEAKEVKMA 420
  421 MLAILCLPLA MLIFTAIAVV LPSAVASIAN GGPHGFSEVL YAYTSAAANN GSAFGGLSGN 480
  481 TPWYNITIGI GMLMGRFLVI IPALAIAGSL AAKKTVPASA GTFPTDGPLF VGLLIGVIVI 540
  541 VGGLTFFPAL AVGPIIEHLA MIHGQTF