YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13471181, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSDKEKDE IEKSSAPLIE HLIELRRRLI WSLGGFFVAF LVCFFFAKKL FNLLVVPFKW  60
   61 ATKWAGLDPH KVELIYTAPQ EFFFTQVKLA MFGGMVIAFP LIATQIYKFI APGLYKNERN 120
  121 AFLPFLIASP VLFLMGASLV YFFFTPMVMW FFLAMQQAGT DDQVQISLLP KVSEYLSLIM 180
  181 TLIFSFGLVF QLPVVTSLMT RVGMLSSKAL AEKRKWAIVI AFVVAAVLTP PDPMSQIGLA 240
  241 IPTILLYEVA IWSARLIERS QERERLAREK QEAGETVADK TPDEPPAPAA S

Type	Start	End	Confidence
Cytoplasmic	1	28	0.99
Transmembrane Helix	29	50	0.92
Non-Cytoplasmic	51	88	0.93
Transmembrane Helix	89	110	0.89
Cytoplasmic	111	121	0.91
Transmembrane Helix	122	145	0.91
Non-Cytoplasmic	146	175	0.93
Transmembrane Helix	176	198	0.87
Cytoplasmic	199	214	0.85
Transmembrane Helix	215	230	0.95
Non-Cytoplasmic	231	236	0.74
Transmembrane Helix	237	257	0.86
Cytoplasmic	258	291	0.92