YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13470829, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGANQEATA TLQFAGKTHE FKVRSGSVGP DVIDIASLYS TTGAFTYDPG FTSTASCESE  60
   61 ITFIDGDAGI LLHRGYPIDQ LAEHGDFLEV CYLLLYGELP TKAQKDDFDY RVTRHTMVHE 120
  121 QMSRFFTGFR RDAHPMAVMC GVVGALSAFY HDSTDISDPY QRMVASMRLI AKMPTIAAMA 180
  181 YKYHIGQPFI YPKNDLGFAA NFLHMCFAVP CEEYKINPVL ARAMERIFIL HADHEQNAST 240
  241 STVRLAGSSG ANPFACIAAG IACLWGPAHG GANEAALNML GEIGHVDHIP EFIARAKDKN 300
  301 DPFRLMGFGH RVYKNYDPRA KIMQKTAHEV LGELGIKDDP LLDIAMELEK IALTDPYFIE 360
  361 KKLYPNVDFY SGITLKALGF PTTMFTVLFA VARTVGWIAQ WKEMIEDPRQ KIGRPRQLYT 420
  421 GAPERDYVPI AKR

Type	Start	End	Confidence
Cytoplasmic	1	132	0.59
Transmembrane Helix	133	151	0.41
Non-Cytoplasmic	152	376	0.70
Transmembrane Helix	377	397	0.61
Cytoplasmic	398	433	0.63