YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85094637
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDFEPILAP AKPKQKKLPF GWPPALKLST LNPVPQRRRL RRKSTASQDN VAALKTSFDV  60
   61 WESIKSLQTR KWKIYDIQHV VCLGFILFSL FILPSAPIIK TAVLLALGGL LLMPITQQFF 120
  121 LPSLPIWTYL LYFFASRFIA PEYRPHIWVK VLPALENVLY GANLSNILSA HSHPVLDLLA 180
  181 WFPYGIGHFA LPAICSAILF LFAAPGSTPV FARAFGYMCM LAVTIQLIFP CTPPWYEKAH 240
  241 GLEPAHYGME GSPAGLARID KLFGVDMYTT SFTTAPLPFG AFPSLHGANA VLEALFMQYY 300
  301 FPKFKYFFIF YVGWIWWATM YLNHHYAVDL VGGGLMAAIA YYISRVRWLP RPQLEKRTRW 360
  361 EYEYVEFGDR PKTYDEEYGS ASAYGLGLLE RRTASDSDEW TLGSSSSLDS LSRGDTVCGS 420
  421 SSSTPDILSP TTPNDDFKHV VLGLTPQGDI WNGGRLARES ELSDVVVLS

Type	Start	End	Confidence
Cytoplasmic	1	76	0.97
Transmembrane Helix	77	99	0.86
Non-Cytoplasmic	100	114	0.68
Transmembrane Helix	115	136	0.80
Cytoplasmic	137	146	0.77
Transmembrane Helix	147	170	0.69
Non-Cytoplasmic	171	183	0.70
Transmembrane Helix	184	204	0.92
Cytoplasmic	205	213	0.67
Transmembrane Helix	214	232	0.90
Non-Cytoplasmic	233	271	0.84
Transmembrane Helix	272	292	0.77
Cytoplasmic	293	303	0.65
Transmembrane Helix	304	320	0.88
Non-Cytoplasmic	321	325	0.69
Transmembrane Helix	326	349	0.83
Cytoplasmic	350	469	0.98