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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28921356, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSLAKECN EAKERYDTCF LKWYSEKYLR GNGTEQNNEC SILFKEYSSC LQVALKERGI  60
   61 DKLLEEAREE LKDSDSTYMG KKKSGYITAR WDLVTRLYEL AIFAWNYGVV TRAAKGFGVL 120
  121 SLVFLIVFIP VQRLATLESN LDDGLMRVFW PTDLPRSDCN GVVVGWRNSA LDVLVVAVLE 180
  181 EVEPRRVESA LKLGNLLRNA PHPVSRIYEQ CGKSSISVLG VSNTPDTVEV DSSWIRVTIA 240
  241 PKQRVPSVTC ARASSIQIIL FERPLPGRMQ YMSLNPIALA LGDKHDGFKQ DFADSGEEDD 300
  301 EKRERLSKET KRKLVEKLKQ HSVIKRIPSP KERALATIVN QINWAWELEK LLQQNVSRIG 360
  361 TRPKRALSVS ERVVESATTA RDMVLVWLWE LITIYVLPVI KKVFVLGLMA HRVVAEMLLR 420
  421 ILEWRLRPRY AALKDISATA QQVEIRLQQF CYWPMQYVTL RMRKNDWASV TTSHPDYIRF 480
  481 YNSLWLVAND VIIGMAFGSY IIENAGWVAD EISRLLTTYT VEALQSSISW LMGWPAGLKL 540
  541 NTELAAFLGD LFLWVIEYWA SCIETIRPML PRIVLIIGFS SFAGASMPLA LFSDLLSILT 600
  601 IHIYSFYLAS ARIFHWQLNI LQSLFHLFRG KKHNVLRNRI DSCDYGLDQL LVGTILFTVL 660
  661 FFLLPTVVVF YLNFAIARMA IILFKACFDT ALSCLNHFPL FALMLRVKDP KRLPGGIRFE 720
  721 LRDTQDFGAT SNDNIPLRQH PSTSVISLQS IPLDFKSMFY QYFQMGNRIR KHYLSPRVAL 780
  781 CLLTGKFVPP LNRRNLYSLQ YSMLPAKRAG VMEMWDAVNS LPASKRKSMP IQVPILANGR 840
  841 RLPSNYGGGR SRSYG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle