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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28920930, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFAARQKL LAAAASAAAT TPNMDDNDND GDIIDRNTSA KSFFTRDNFR KALQAQKQEP  60
   61 SHHVDDTPAA RPRKRKQGPK DQVPAEGRDE GRQLKSQFPN LSEPMPTGRR RIIYYSSQRL 120
  121 SQTNIQPKAN GRMLLKLLDG ERLVILGSYG IKVREGELTV AGAFLSKSDL VHWVHAPQCH 180
  181 ALPVIRITND ATIELHPHPG AQSLRQLASL NPAFGKLWNE SDDVAPGQAK KVFPTFQIIF 240
  241 TSDDAPKRGG IQELVSPAEW NKQLADVLDS KRKATPVVFL TGPKSSGKST FGRLMANRLI 300
  301 TGSGLSRQPW APVVVLDLDP GQPEFGPPSV ISLNKLSSPN LSPPFCHPAL DPRTAQLRAH 360
  361 TVASVTPSLD PDHFVACALD LFHTCKTNPS LNKLPLIINT PGWIQGTGLD ILSELIRQTV 420
  421 PTEVIYMSQD GPEETVDGLK AACQEKKIPF VALPSQQPQG QPSSSVDATT PATSGGGGSS 480
  481 RTALHLRTMQ TMSYFHLLFS SLTVPVPHSQ SQNQSQPHPG PTWSATPLTH LPPWRVRYRG 540
  541 PRPGFLGILC YDHQPAPDLL AEAINGMILA LVKIEDRAGA FRDFPDLLVV SSPQKQQQQH 600
  601 QQSIQQFKKQ SSSQKQQQPE LLICKTPRES LPHLPNPQGK TLSPAHSRVL GLVLVRGIDV 660
  661 RRGELHLLTP LPVEMLAGNE QNLVLVAGRF DTPSWAYAED LHRRQWEKNN AAAARNKQQG 720
  721 LVLGGSAKME IDDDDDDGTG DGDQSDETES VGADEVEERP ERERVQALHG GTSEAQPWVE 780
  781 MLHGSQGRAA GSKVWRVRRD LGRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle