YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85113262
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.77
Transmembrane Helix	28	50	0.81
Non-Cytoplasmic	51	129	0.61
Transmembrane Helix	130	152	0.70
Cytoplasmic	153	159	0.51
Transmembrane Helix	160	182	0.85
Non-Cytoplasmic	183	191	0.46
Transmembrane Helix	192	217	0.77
Cytoplasmic	218	224	0.50
Transmembrane Helix	225	248	0.84
Non-Cytoplasmic	249	255	0.55
Transmembrane Helix	256	279	0.89
Cytoplasmic	280	358	0.61
Transmembrane Helix	359	381	0.65
Non-Cytoplasmic	382	387	0.38
Transmembrane Helix	388	408	0.88
Cytoplasmic	409	412	0.36
Transmembrane Helix	413	427	0.30
Non-Cytoplasmic	428	433	0.49
Transmembrane Helix	434	453	0.69
Cytoplasmic	454	459	0.67
Transmembrane Helix	460	480	0.83
Non-Cytoplasmic	481	493	0.63
Transmembrane Helix	494	513	0.90
Cytoplasmic	514	526	0.63
Transmembrane Helix	527	551	0.87
Non-Cytoplasmic	552	571	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEREALVRIP SFPLAAFLWP ARSSVSQWEL LPLILMAVGL FRWAAGLWGY SGFEKPPLFG  60
   61 DYEAQRHWME VTTHLPISQW YFHDLEWWGL DYPPLTAYHS WICGKIGSLI DPAWFALYDS 120
  121 RGSHDPTLKI FMRATVLVSE YLIYIPAAVI FVRRFSRLSG VPAWTSSVAL VAILMQPATI 180
  181 LIDHVHFQYN TVMLGFVLAS MSSMLAGRNF WACFFFVMAL GFKQMALYYA FSVFAYLLGV 240
  241 CVFDHTNIPR FNIPKFIGIA LATVVSFAIL LLPIVAGTLS EASRGITAHP GGAHPPLPLF 300
  301 ADLAKHLNTE AFYYPVIEQL VQMIHRVFPF ARGLFEDKVA NFWCAMNVVI KLKQYPAELL 360
  361 QKGALVATLA AIVPPNLILF LRPNKHPGLL PLAFATTAWG FFLFSYQVHE KSVLLPLMPM 420
  421 TLLLAGRQGL GKDTRAWVGF ANILGCWTMY PLLQRVDLRV PYTVLTLLWA YLLGLPPTSL 480
  481 NAYFQDGSSI WSQWATAFIH GFFYLTMAFW HVLDMFVVAP KDKPDLWVVA NVGVGAAGFS 540
  541 LCYLWCLGSL VIESEILPPS WTGKEAKTKS E