YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28925974, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPSVTPPA PDGNSFLVQI VSLLSSAASH LRLPVIASTG VAAILTGLLY FKQKALIYPS  60
   61 HMPPGSRTDI PRPSFYRIKD YEELIIPTKD GEKLSAFYIR GPKGGSNSKV TVIMFHGNAG 120
  121 NIGHRLPIAR MLLQAAGCNI FMLEYRGYGI STGHPDESGL NIDAQTALDY LRDRAETRDH 180
  181 KYIVYGQSLG GAVSVKLVSK NQGRGDIAGL ILENTFLSMR KLIPSIIPPA RYLASLCHQV 240
  241 WATDTLIGNV KVPTLFLSGL QDEIVPPTHM KQLYHLSNAP IKIWKPLPNG DHNSSVLEEG 300
  301 YFEAIAEFIQ RVSSGDPEKK

Type	Start	End	Confidence
Signal Peptide	1	29	0.40
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	320	0.82