YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28926191, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.98
Transmembrane Helix	37	59	0.93
Cytoplasmic	60	66	0.87
Transmembrane Helix	67	87	0.91
Non-Cytoplasmic	88	128	0.92
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	157	0.82
Transmembrane Helix	158	179	0.92
Non-Cytoplasmic	180	191	0.86
Transmembrane Helix	192	212	0.93
Cytoplasmic	213	225	0.84
Transmembrane Helix	226	245	0.90
Non-Cytoplasmic	246	255	0.78
Transmembrane Helix	256	278	0.90
Cytoplasmic	279	286	0.86
Transmembrane Helix	287	305	0.95
Non-Cytoplasmic	306	311	0.69
Transmembrane Helix	312	331	0.91
Cytoplasmic	332	342	0.85
Transmembrane Helix	343	367	0.83
Non-Cytoplasmic	368	387	0.94
Transmembrane Helix	388	410	0.91
Cytoplasmic	411	510	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSWFGAPT PFNGTTPNGG DSASENLNQW YQSGDQAFIL VASCMVLIMI PGIAFLYSGL  60
   61 ARRKSALSLI WVCMMSSSVV MFQWYFWGYS LALSSTATNG FIGNLRHFGL MNTLGAPSPG 120
  121 SNLIPELLYA FYQMQFVGVT AALVVGATAE RGRVVPAMVF IFIWATLVYC PLCCWAWNVN 180
  181 GWAFKYGVMD YAGGGPVEIG SGVSALAYSW VLGRRNEKMM LNFRPHNISL ITIGTVFLWF 240
  241 GWLGFNGGSA FGANLRAAMA CWNSCLTAMF AAMTWTLLDY RLAKKWSLVG WCSGTISGLV 300
  301 AATPASGYIP PWASIILGVV TGIVCNFGTK IKFMIGIDDA LDIFAEHALG GVVGLIFNGF 360
  361 FAADYIIGLD GVNQEIPGGF LNHNYKQLYI QIAYVCATMG YSFVMSAILA KGVDMIPGLH 420
  421 LRASEEAELL GMDDDQHGEF AYDYVEVRRD YLAWTPAEKE QRQDGDIIVP QHGIEGHQEL 480
  481 LSSSRHGPTM SELPHHEEED PREKRGSTSE