YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85117833
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECASPFSFA AHDDNTEARA SGAANAPERP ALRNRRKSQL NARRKSFVNS IVDGEEALLL  60
   61 KMDAFLVELE SRLEYWENYG ELTLDSSIEV ALSTLQAVRT RCSHVSEEVM GAGRRRLHVL 120
  121 VETLETSYHE AMAAAGSLNE KAKVGIDLLD GLLEDLETQA AKLREKGLAN AAESLMGEGK 180
  181 RVMEEGIERA MRAAENLEDH IQRAINQARE KGLISYEELP IPWRINPHIQ KGYRFSENKL 240
  241 ACIRSAFTFS NELINIWSHA IGLILVLAVA FYFYPTSINF SQSTTTDIVI AAIFFFAACQ 300
  301 CLACSVIWHT MNSVADVNLI SMFACVDYTG ISLLIAASII TTEYTAFYCE PVSRWVYMIA 360
  361 TAFLGVGGVI LPWHPRFNGQ DMAWVRVAFY IGLSASGFLP IFQIWLTRGG MSVWEHYSPI 420
  421 LESLFVYFLG ALVYASKVPE RWCPGMFDYV GGSHNLWHMA VLGGILFHYN AMQEFFSNAF 480
  481 RRAQDACPMY

Type	Start	End	Confidence
Cytoplasmic	1	252	0.58
Transmembrane Helix	253	275	0.89
Non-Cytoplasmic	276	287	0.52
Transmembrane Helix	288	310	0.92
Cytoplasmic	311	318	0.51
Transmembrane Helix	319	342	0.83
Non-Cytoplasmic	343	354	0.48
Transmembrane Helix	355	374	0.95
Cytoplasmic	375	382	0.51
Transmembrane Helix	383	406	0.88
Non-Cytoplasmic	407	415	0.52
Transmembrane Helix	416	436	0.78
Cytoplasmic	437	453	0.37
Transmembrane Helix	454	472	0.88
Non-Cytoplasmic	473	490	0.42