YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85113776
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHAIAPMRT FSSVLSRTPA RQCQRFISTA TTTRPTVPRL QAQLHQPVAQ RRTYKTVEEA  60
   61 KSKYRSGPFS WKAGLLFVLT GAGLLWYFEH EKQRMQRKRI ADATKGVGRP KVGGPFELID 120
  121 QNGKPVTEKD LKGRYSLVYF GFSHCPDICP EELDKMAAMF EKVEAERPGA LKPVFVTCDP 180
  181 ARDTPQVLKE YLAEFHPLFI GLTGTYDQIK AMCKAYRVYF STPSKVEPGQ DYLVDHSIYF 240
  241 YLMDPEGDFV EALGRQHSPD QAAKVILDHM KDWQVLLSGS DTERWCLKVL GYASGGLGSL 300
  301 LSL

Type	Start	End	Confidence
Cytoplasmic	1	68	0.84
Transmembrane Helix	69	88	0.89
Non-Cytoplasmic	89	303	0.91