YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32420179, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	265	0.81
Transmembrane Helix	266	287	0.82
Non-Cytoplasmic	288	305	0.79
Transmembrane Helix	306	327	0.87
Cytoplasmic	328	352	0.78
Transmembrane Helix	353	372	0.82
Non-Cytoplasmic	373	379	0.77
Transmembrane Helix	380	401	0.93
Cytoplasmic	402	408	0.81
Transmembrane Helix	409	428	0.94
Non-Cytoplasmic	429	433	0.86
Transmembrane Helix	434	454	0.92
Cytoplasmic	455	467	0.85
Transmembrane Helix	468	489	0.89
Non-Cytoplasmic	490	507	0.81
Transmembrane Helix	508	527	0.94
Cytoplasmic	528	537	0.76
Transmembrane Helix	538	559	0.92
Non-Cytoplasmic	560	565	0.74
Transmembrane Helix	566	585	0.95
Cytoplasmic	586	688	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPTQEGTS PTTLSVLSLD ATSASSPSPT GDNTPHALPG TSSAFTSGIG TAGASGHATP  60
   61 TVSARRTGTG SYNLDISGDE DPHVTVDTVS VPVVLSTTPS ATSTLKSKQH FDLAICAHDE 120
  121 AVKHTDATPY LNSDSFDIEM APISGVGGGH RRRRSSLMNP VGASSSSRHR SPRPRSSAGK 180
  181 GIDFDEVKSV GEDTRVQEVA GRYDGPSDDD LSDEDLHIDE EAGLTGADKR RKSRKRSRNT 240
  241 QLDQRIARDR ISEAEKLEAD RAVLKNAVIN VTLILLWYFF SLSISLYNKW MFDPKKLNFR 300
  301 FPLFTTATHM LVQFSLASIV LFFFPSLRPT NGHKSDLGQS RHEPERPVMT KWFYLTRIGP 360
  361 CGLATGLDIG LGNASLQFIT LTFYTMCKSS SLAFVLLFAF LFRLESPTWR LVAIIATMTF 420
  421 GVVMMVAGEV EFKLGGFLLV ISASFFSGFR WGLTQILLLR NPATSNPFSS IFFLAPVMFL 480
  481 SLISIAIPIE GFSALFAGLK VIAEEHGMLM APLLIVFPGT IAFLMTASEF ALLKRTSVVT 540
  541 LSIAGIFKEA VTISAAAIVF GDTMTVINVM GLLVTLAAIA MYNYLKISKM RQDAQNNVHR 600
  601 AHMVGGDSGS GSSSSASTSR SGSRSGSGGS SSERDGEGED VEDEGRGFLD GAVAETLFTA 660
  661 DGDVIKRSPD LPATRDRGRS ADQTHRAD