YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28925405, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSRSPSPV PGGGWASPGL TNNLSPSGRS SPTKAYAGSN GTPVMWERQK NMGGAAYQSF  60
   61 STQNQGFFSR HMRRISSSLP RFKADNTHGA EREKIGQGRW NMPRLGRIRG ITGRMSRRTK 120
  121 MLLAFALLFL LGYIIFYSTP ANVGGGVMEW KGAREWAIER DSIRNKKKYV AKWGYDLEIV 180
  181 DMSTKKRYAH EWRESWEKVD FIRSTLRKYP KAEWVWWLDL NTFIMEPSKS LQDHIFDHIE 240
  241 DVTYRDINEY NPLNISHPPA DPYLDELSKS PIGDGNPNSI HLMLSQDCSG FNLGSFFMRR 300
  301 GTWTDHLLDV WWDPVAYEQK HMEWEHKEQD ALEQLYTAQP WIRKSTAFLP QRMINSFPTG 360
  361 ACSEKGTDPR IHYDQKDRDF LVNMAGCEWG RDCWGEMYNF RELSYHLNRS LWERFKEDLL 420
  421 CWIWFKLTGK KVKF

Type	Start	End	Confidence
Cytoplasmic	1	118	0.97
Transmembrane Helix	119	137	0.90
Non-Cytoplasmic	138	434	0.97