YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85118037
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASRRRQAP KPQHTSVNSN KNRDDRGSIV SEPSPRVINA APSLEKAEMY GIDDNRPFFS  60
   61 RAMALAGRMF IETIPQWIAI GVMLSLIFGG CCSNVFALES IIKVEPGAGT LLTFVQFLFV 120
  121 ALVGLPSQID WSRPPFFLKK NQVPIKRWLI NIALFFAINV LNNHAFSYDI SVPVHIILRS 180
  181 GGSITTMIAG ALWGKRYSRI QIVAVLLLTV GVITAAWSDA QSKGSSKKET HEKNSDFGIG 240
  241 LAILFVAQSL SAVMGLYTEE TYKKYGPHWK ENLFYSHLLS LPLFLFFWPS LKTQFKKLAN 300
  301 SAPLTLPLPD FEEYPNLSPN IQKFLENIHI PSQLFYLALN VLTQYACIRG VNLLAAASTA 360
  361 LTVTIVLNIR KLVSLLLSIW LFGNKLAFGT LVGAVIVFGA GGLYSLDGKK KAPVRRVSSA 420
  421 PLKKA

Type	Start	End	Confidence
Cytoplasmic	1	76	0.93
Transmembrane Helix	77	98	0.93
Non-Cytoplasmic	99	106	0.82
Transmembrane Helix	107	127	0.91
Cytoplasmic	128	147	0.83
Transmembrane Helix	148	166	0.94
Non-Cytoplasmic	167	196	0.51
Transmembrane Helix	197	218	0.77
Cytoplasmic	219	236	0.53
Transmembrane Helix	237	258	0.88
Non-Cytoplasmic	259	272	0.59
Transmembrane Helix	273	291	0.87
Cytoplasmic	292	344	0.66
Transmembrane Helix	345	369	0.74
Non-Cytoplasmic	370	385	0.68
Transmembrane Helix	386	406	0.93
Cytoplasmic	407	425	0.82