YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85117994
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILQIPYRE GRDGFWGEQT STLNWCEEDY NITYYCAELV NTLTNLMFMW LGVKGLRNVL  60
   61 EFKHSPIFIL AYVGYLVVGL GSMAFHATLK STHDLYRLYH VLCHIFLQEI PEDPITDCLD 120
  121 HGWAWYLHHC KQVMISFGRS LGREILPRAA GLCARCGRWH WFVSDARPFV PNEDYTDTWN 180
  181 IIAIITFVGG FFIWNMDNIF CRHLTTAKNQ LQLPWSIVLE GHGWWHILTG LGAARRRNSC 240
  241 LIGGLGGLFL RSFPEPTRVQ PRAANNIRQE GERP

Type	Start	End	Confidence
Cytoplasmic	1	66	0.68
Transmembrane Helix	67	89	0.89
Non-Cytoplasmic	90	177	0.81
Transmembrane Helix	178	196	0.84
Cytoplasmic	197	274	0.66