YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85111830
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVSSSCSF SNSTFQRFKS GKLGFNNRTA ETRQAHLFGT VHRSNQHYYT KPAPTVPATP  60
   61 PLSLSGQRRN VDIREDIPVV RIAGGTLPSH HRLRIGTVNS LHRRLGGEAA AGADTRPDYF 120
  121 VDPQVDTQLD DPDAQDTEPQ PFETFPHVVN PPAPTGTVIS VTMTPTSQPT SSTSPQPASP 180
  181 MAHQTDNNTE CRLLGPFAIL VQIALGCLAL LSLVYKRWRE RPQRPVKIWF FDVSKQVFGS 240
  241 VLVHAANVFM SMLTSGKFEI KVLDPVAVAV GTKMVKRAVE YGILSARGED EYTPNPCSFY 300
  301 LLNLAIDVSQ KKQTTLGIPI LILIVRLLSR GLQYTPLGQP PESLQSGNYT PLHSPPGTKP 360
  361 RWSWWFKQSI IYFIGLLGMK FCVLIIFMVF PWISRVGDWA LGWTEGNERL QIIFVMMLFP 420
  421 LIMNALQYYI IDSYIKKDEK IPEEGAESEG LVTGRGDAEA AGAEERGRGR GVYDIISGSD 480
  481 DDAGSSGDGD SDGQEDEEDE LPKDKAAELM VGHKKRGFKT RTKAVREEEY DPAVDGDTPT 540
  541 VIGSSSSAVS GVSVKD

Type	Start	End	Confidence
Non-Cytoplasmic	1	193	0.94
Transmembrane Helix	194	215	0.93
Cytoplasmic	216	369	0.90
Transmembrane Helix	370	393	0.92
Non-Cytoplasmic	394	409	0.93
Transmembrane Helix	410	431	0.93
Cytoplasmic	432	556	0.96