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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28925400, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSTRHSYA SNRRVDSIQS VRSVTSDEER RNSRIQASKA RQTAVSYDEA YSFALRVAFL  60
   61 NYLLQPRKKR KEYVAVPKAV HRSHSSSVSE LMKDFVPSGS SSSMKLPHGF RGQLEKRMTA 120
  121 VLQGTERLPG YNDAAVKRTF GVAYTAFTQR DFQKSIDKDR KVEPLVLIFY SSAIKFHSAG 180
  181 KSPDDYHWRS LVDRHLAMFV RLISSVIKDI GSDRDDLLAR LNTLENKLLT NDQNLSLDKG 240
  241 QESSTFVEVE VPLSYEIKDM PMVLFVAKIF GLPNSQVQND IDKNMTTWTE EAALKDFKNY 300
  301 QFRLSANMAG TLRKMDFDVD DAFEDWKRTE TQQLAQIFAE ILSIRPDLKT GSGSDKPLPL 360
  361 RPMSLYSEDQ AFSDLSKMLS NRSSGSFGFD PSSGFSPMSP DDNSSIRSVD EPSYTFMPVD 420
  421 PRPVYKTILQ YVMSYDQLHS EEFPFAEESI EFLTELAIRW RIPQFMRHVT LVEVAVRKYL 480
  481 DQEISTMQLD ACLDFVKEAQ PEPKKPPPIN FFGATLFDVE PGRWTMTDFA GYQQSIKDLH 540
  541 DALLRELYTL LIQCYKPNPP SVGVVMSVLA NHVHNDPTYN ERPDELAEYT QHLENGLRQN 600
  601 AAEVYRGFLD ANIPSNMEDW NFAHVVKLGQ AVVGLAEKIK KRYRKNPEIM GASPFKVLVE 660
  661 TIFPSFEEDA QEFIKRVVDM SKTRGEEGQI DVQDGFDLYK ELVEIRKMHV ESLPGKPFAF 720
  721 HIESLLEDFV WRWIRNAEAR MTDFVEQAIK QDTFQVRTND PDDIPTDEQR HSVSIIDTFT 780
  781 LFTQTVNQIH QLDWDDELHH AKFMTALAKA FSAGIGRYCE IVEQHFAKEM DRQTPQEAAA 840
  841 SRSAQDRFLQ YAKDAWNSKD KVEPFQFYPQ SFVKLNNIEY AMQALDKLEK TMNVDGCAEA 900
  901 IRRVEGIKPL VRKAGKYVFT IKIVEAEDLK ACDPGGYSDP YVVLCDEYQK RLAKTRIIMR 960
  961 NLNPRWDESI DITVSGPLNI IATIWDYDTF GDHDFVGRTS LKLDPVHFSD YLPREFWLDL1020
 1021 DTQGRLLLRV SMEGERDDIQ FHFGKAFRHL KRTERDMVRK ITDKLTSHIN HSLSHDTLKS1080
 1081 LLSRGIAASM ANLWKKRQST APTVTAQDVE NTLQPLFTYF DENFAIMKQT LTDATMVAVM1140
 1141 TRLWKEVLMA IENLLVPPLS DKPSTQKPLT QAEMDIVYRW LELLFNFFNA KDAQTGEVLG1200
 1201 VPSDVLKSPK WHELASLNFF YFDSTENLIR TSERMAAANA QRAREQQQAT AAAAGAGSRM1260
 1261 SAPPQLHSNN NNNNSLAPPG GMTGAAAIGA FGSLGTIRRG KSIMMSRNLG TMRQAKLEKR1320
 1321 KEAQADPSDD MILRILRMRP EAAHYLKERH RQKERMAAAA AAAMIVRQSV NQKFGSGFDN1380
 1381 GGGLSVNKRQ SVVPPVPKLP FGAGTSGGQV IGGGQFGRGG R

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle