YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85093430
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	198	0.99
Transmembrane Helix	199	221	0.86
Non-Cytoplasmic	222	235	0.82
Transmembrane Helix	236	256	0.94
Cytoplasmic	257	265	0.78
Transmembrane Helix	266	285	0.94
Non-Cytoplasmic	286	292	0.85
Transmembrane Helix	293	317	0.85
Cytoplasmic	318	326	0.83
Transmembrane Helix	327	349	0.93
Non-Cytoplasmic	350	356	0.86
Transmembrane Helix	357	377	0.92
Cytoplasmic	378	426	0.95
Transmembrane Helix	427	448	0.92
Non-Cytoplasmic	449	467	0.86
Transmembrane Helix	468	490	0.94
Cytoplasmic	491	510	0.92
Transmembrane Helix	511	530	0.94
Non-Cytoplasmic	531	536	0.80
Transmembrane Helix	537	560	0.89
Cytoplasmic	561	577	0.76
Transmembrane Helix	578	598	0.86
Non-Cytoplasmic	599	606	0.76
Transmembrane Helix	607	627	0.94
Cytoplasmic	628	643	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLDREPAV DAAAASEKQQ MHEPPPPPPP PQPPLARAPS SQKQDERLDS NRPEHLDPLD  60
   61 DPENQSPMSR RHTDSHMNTS SSSDDEYDTE KDSDEDADEY DGHRITSRDI RLTRTRTNRS 120
  121 MRSSTKEGPE HANTTGRLDL TKTVSRRDTV LSRLRSRPTA RFEFNHPLAH TPTGKDVIVD 180
  181 FEGPDDPYRP MNWPMKKKIM TTMLYGLITM SASWASSSYS AGTAQVSNHF HVGHEVAVLG 240
  241 TSIFLVGFGI GPLLWAPLSE VFGRRVAVFV PMFFATCFSF GSATAKDYQT LMITRFFGAF 300
  301 FSSAPVTNTG GVLGDLFSPA ERGIAMAGYA MAVVGGPAIG PVVSAAVAIQ PSLGWRWTLY 360
  361 LTGILQAFVL ALGLIFIDES YPPRLLVNKA RRLRIQTGNW ALHAKFEEWD VTFSELAQKF 420
  421 LLRPVQLLCT PICFLVALYA SFCYGILYMQ LGAIPIIFGE VRGWTQLVAT LPLLCIFIGA 480
  481 MIGCGANVYN QFIYNKAYRA AGDRAVPERR LPPMMVGSVI FSGGQFMLGW TAPKDIHWIV 540
  541 PCIGLILMGS GFFMIFQAAL NYLVDTFTRY AASAVAANTF LRSCFACAFP LVVTPMFHNI 600
  601 GVGPGSSITG GFAALLIPVP FVFFVYGKRI RKRSKWSRPS VYD