YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51245013, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIFSFILV LGALIFVHEL GHFLLAKFFG VRVLKFSLGF GPRLCGKTIG ETEYVLSAFP  60
   61 LGGFVKMLGE NPDEEELTGV EKERAFSYKP TYQRFLIVLA GPLFNFIFPV LIFSSLFFFQ 120
  121 GIPVSQDTTR IGQVNEGSPA AQAGMLADDI IVDINGVETT SWQSVLNGVK DSGGVPLKVL 180
  181 VLRGDKEVSL AIVPQRDEVK DVFGQAVEER YMIGVMKAEA LSYEETGLFA AIWRGLQQTW 240
  241 FYIYLTGLGI IKLIQQVVPA SEMGGPILIA QMAGEQMRAG WINLLYFTSL LSVNLGILNL 300
  301 LPIPVLDGGH LMFLTLEGIR KKPLGEKAQI IAQQIGLGLL ATLMLFVFYN DIMRLIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.60
Transmembrane Helix	7	26	0.87
Cytoplasmic	27	94	0.68
Transmembrane Helix	95	119	0.84
Non-Cytoplasmic	120	239	0.69
Transmembrane Helix	240	259	0.69
Cytoplasmic	260	280	0.76
Transmembrane Helix	281	303	0.89
Non-Cytoplasmic	304	329	0.82
Transmembrane Helix	330	350	0.91
Cytoplasmic	351	357	0.71