YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51243889, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIDSVFLLS LVYAVVNALF LVRGISNGGF LFDEQWVKIS PISYLLSYMF QLLSIVYIVF  60
   61 FYFVAKTKLE RDSLLFVNKR SGLVVLIIQV AFWLFCIYTG SGIAGSKFRF AEVNLLNYVF 120
  121 VIVKPDLLAI LTIPFISNNK VCKYNLLFLG FSLMSRGWMG SVFIVFLLYL VRNEIYFKAK 180
  181 NSIKFFLLFI ALILSLPFID GLKWGLRKGI AVNEIIINVV GNYNFDFFGK IIFSVISRFQ 240
  241 HLNYSASLIE NREMYWDLFL NRNFRTFFEN GILYEIFIKI FPSFSRPDLN LVLSGAYLKG 300
  301 EVYNVDPGMA GWIGLLGFSS VFFFMFVFCI HFVPLFVGAR YLGARYVRLF SLFSLLYLFH 360
  361 GWFAPFLDFT LYSVIYYFFF KKIKIWG

Type	Start	End	Confidence
Cytoplasmic	1	6	0.88
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	43	0.84
Transmembrane Helix	44	65	0.92
Cytoplasmic	66	81	0.91
Transmembrane Helix	82	104	0.88
Non-Cytoplasmic	105	117	0.83
Transmembrane Helix	118	136	0.54
Cytoplasmic	137	145	0.46
Transmembrane Helix	146	171	0.80
Non-Cytoplasmic	172	181	0.51
Transmembrane Helix	182	204	0.85
Cytoplasmic	205	311	0.55
Transmembrane Helix	312	335	0.87
Non-Cytoplasmic	336	355	0.49
Transmembrane Helix	356	380	0.76
Cytoplasmic	381	387	0.57