YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28926612, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	35	0.86
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	118	0.94
Transmembrane Helix	119	137	0.79
Cytoplasmic	138	156	0.78
Transmembrane Helix	157	177	0.90
Non-Cytoplasmic	178	187	0.82
Transmembrane Helix	188	207	0.91
Cytoplasmic	208	219	0.92
Transmembrane Helix	220	239	0.95
Non-Cytoplasmic	240	247	0.78
Transmembrane Helix	248	268	0.91
Cytoplasmic	269	278	0.88
Transmembrane Helix	279	299	0.93
Non-Cytoplasmic	300	310	0.86
Transmembrane Helix	311	330	0.93
Cytoplasmic	331	345	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNVTSKPG GAPSFLSIQQ LLLLGFVALA TPVAASIGDR LPEFQECIRV CERENCGPDA  60
   61 EHQTPIPLHR RLLLWSCPSE CDYTCQHLTT SSRLSQSPPP LPHPVVQYHG KWPFIRFLGM 120
  121 QEPLSVLFSL GNFWAHYQGL YTKILPNIPP SYPLRKWYIL LSYVGMASWF FSAVFHTRDF 180
  181 PVTEQLDYFA AGANVLYGLY YTVVRIFRLD KKDTPRRESL LRLWTALCIL MYVAHVTYLK 240
  241 MWAWDYTYNM AANVAVGAIQ NLLWSWYSWT RYREQKKGWA AWPGIVVAWV LVAMSLELLD 300
  301 FPPLWGSVDA HSLWHAGTIV PTIIWYNFLV KDAQDDMARS ERLKS