YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50914988, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGLIAQIEK GKPFFEKISR NIYLRAIRDG FIAGMPVILF SSIFILIAYV PNAWGFHWSK  60
   61 DIENLLMTPY NYSMGILGLF VAGTTAKALT DSMNRSLPST NQINFISTML AAIVGFLLMA 120
  121 ANPAKDGGFL TGFMGTKGLL TAFIAAFITV NVYKVCVKNN VTIRMPEEVP PNISQVFKDL 180
  181 IPFTLSVVLL YVIELIVHST LGVNVAESIG KLLAPLFQAA DGYVGITIIF GAFALFWFVG 240
  241 IHGPSIVEPA IAAITYANAE TNLQLLQAGE HADKILTSGT QMFIVTMGGT GATLVVPFMF 300
  301 MWLTKSKRNK AIGRASVVPT FFGVNEPILF GAPLVLNPIF FIPFILAPIV NVWIFKFFID 360
  361 TLGMNSFTAN LPWTTPAPLG LILGTNFQVL AFILAALLIV VDVIIYYPFL KVYDEQILAE 420
  421 EAAGTNSSDV LKEKVAANFD TKKADAILEK SAAKETKEIT DQTNVLVLCA GGGTSGLLAN 480
  481 ALNKAAKEYG APVTAAAGSY GAHREILPQY QLVILAPQVA SNYEDMKVET DKLDIKLAKT 540
  541 EGAQYIKLTR DGQGALDFVK EQMEE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	50	0.94
Non-Cytoplasmic	51	69	0.87
Transmembrane Helix	70	90	0.89
Cytoplasmic	91	102	0.84
Transmembrane Helix	103	121	0.96
Non-Cytoplasmic	122	137	0.71
Transmembrane Helix	138	157	0.77
Cytoplasmic	158	218	0.67
Transmembrane Helix	219	241	0.87
Non-Cytoplasmic	242	281	0.71
Transmembrane Helix	282	304	0.90
Cytoplasmic	305	326	0.57
Transmembrane Helix	327	359	0.70
Non-Cytoplasmic	360	378	0.48
Transmembrane Helix	379	409	0.74
Cytoplasmic	410	565	0.69