YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85117392
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPIAHTPS PQPDLNRNRL PTLFEVLSRR TLPPVDLFSF YIYMRDQQRS VDYLDFWLDV  60
   61 AQHMSLCRHY VRELRRSVLV GTPEPDRSSK RSSAILESMG DLNPVAGPSM WASEKEKDQD 120
  121 AQMSAFLRED RSITQESPQS STDRRGRPSN LSNQRELTTD SNSPAHAVAR DDIRASAEKI 180
  181 LYTFLLPGAE REITLPGSIT SDVTTAIEDY GRDDPEVFDV AKDYVFQAME RDAFPGFLRM 240
  241 KALGNLIPPT LMLRLMIGLV AMFGGFWTAF TLIFLNESRQ TRCWYSLDPI LALVGLSEYT 300
  301 PFNFSRVREP YVRRLLAQRS MVVLAVTAVV DAALCVLFIL VPGKRL

Type	Start	End	Confidence
Cytoplasmic	1	249	0.61
Transmembrane Helix	250	275	0.83
Non-Cytoplasmic	276	283	0.55
Transmembrane Helix	284	302	0.55
Cytoplasmic	303	320	0.65
Transmembrane Helix	321	341	0.95
Non-Cytoplasmic	342	346	0.63