YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85113423
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGSIFQC LLRTPRRQFT TSSTRRQTQQ PGDDPNFTSI LDNPPELVRT GRRHGKGLII  60
   61 LAIIPITALF LGTWQVYRLK WKTDLIAKCE DRIIRDPLPL PPRVDPAAIA DFDYRRVYAE 120
  121 GVYRHDQEML IGPRMRDGEQ GYMVVTPLER GDDPSSKVLV NRGWVSKKFA DQRSRPDSVK 180
  181 QGEKVRVEGM LREPWKKNMF TPDNRPDIGE FYFPDVKQMA ELTGSQPVWI EQTIVPDIIT 240
  241 VYDYEARGIP IGRVAEVNLR NNHAQYIFTW YGLAAATSIM FWLVVKKPAN QITKRVRMNK 300
  301 SW

Type	Start	End	Confidence
Cytoplasmic	1	56	0.90
Transmembrane Helix	57	77	0.86
Non-Cytoplasmic	78	265	0.98
Transmembrane Helix	266	285	0.92
Cytoplasmic	286	302	0.92