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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PALI_NEUCR
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRPATPLAV LLFAAFGLLT LATISTPIIK QIPLSSFEIK DVGDLSFGVF GYCTSSGCSP  60
   61 IEIGYDTLLI LTAAFSDKIN SDFDIPRATR STLSSILIVH PVAALITLIN FVLAIVAHFH 120
  121 SPSHSARYLL ILFIVSFVDF IVCLLCFLVD VLLFIPHLSW GSYIVVAATI LVAFCGLVTC 180
  181 AMRRTLVNRK ANRKRIAENA EMSGENYYNR QAQTAPVTQV TGPQPTVPMI SGANGGGDKL 240
  241 PEFTTFEKKD DRSEERIPLT SVSPIERSPA TLVNDSTPPN FMDGAPSRSP STTPVGRDQY 300
  301 GNPLPPQDGY AMRVGPQNER LNSRGRGGMP PGGYRGRGGF PGPGRGGGPP QNGRGGYGPP 360
  361 GRGRGGYGPP PRGYGGPGPR GGRGPPPQGY QGGPDRRPSP GAPYGPGPGV GTYGPSQPSP 420
  421 YANRQQSPGP QFAAPGYGNP EQPGPQYSAY NPRRVSLPRA ESPPPLPGID DGMPGPAVEL 480
  481 DASPANRGVG QYGIRDSDSD VAGMLAMQQA RVPDPDRGND ANGHSQEGPN DVYVPPRQAW 540
  541 NQGFVGSTPG LAPPTARGPT RPISEAVTAT VASDYYEDVD PRFAEPSAAA DKRPPPISMQ 600
  601 SPPASNSYDD IPNRARSPAE SENSNFTSIS QRGINPRWNS ANAPMPPPVA GVYAGGGGGG 660
  661 NVVPRRPVNR PGAGPADGSD LFLNSNPDFQ LPGRGGNMPR AAGPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle