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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32417248, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSGKKSPA PPPAYAPAYA PPPAYEAVPT SAVVSKNKNN KNKSAKVKDD YASEGVQDND  60
   61 PFLLPGSDFV LLTIITMLSA VVRLFRIYQP DSVVFDEVHF GGFASKYIKG KFFMDVHPPL 120
  121 AKLMITLFGW LAGFDGSFDF KEIGKDYVEP GVPYVAMRMF PAICGILLAP TMFLTLKAAG 180
  181 CRSTTAFMGA CLIIFENGLL TQARLILLDS PLMIGTALTA LGFTAFTNQQ ELGPGKAFTP 240
  241 SWWFWLVVTG LGLGITASIK WVGLFTIAWV GSLTLIQLWV VLGDHKHVSP RAFAKHFMAR 300
  301 AFCLIVIPLT FYMAMFGIHF MCLTNPGDGD GFMSSEFQST LNSKGMQDVP ADVLMGSRVT 360
  361 IRHVNTQGGY LHSHPLMYPT GSKQQQITLY PHKDDNNIWL LENQTQPLGI DGQPINGTGA 420
  421 WDHLPETPYI KDGAILRLYH LPTHRRLHSH DVRPPVTEAD WQNEVSAYGY EGFDGDANDF 480
  481 FRVEIVKKKS KSGVAQERLR TIDTKFKLVH IMTGCVLFSH KVKLPTWASE QQEVTCAKGG 540
  541 SLPNSLWYIE FNDHPQLGAD AEKVNYRNPG FFGKFWELQK VMWKTNAGLV ESHAWDSRPE 600
  601 AWPILRRGIN FWGRQHRQVY LMGNPIIWWS ATAAVVIYVL FKGIAILRWQ RSCNDYANPI 660
  661 FKRFDYEVGT SVLGWALHYF PFYLMQRQLF LHHYFPALYF AIIAFCQVFD FVTARISLVK 720
  721 DKVIFNRLGA VLFLTLSMVV FWLFSPLAYG NPWTKAECNR VKLFSTWDFD CNTFLDSYDN 780
  781 YYGITPTSQT PSQTPVQGTL ERPAVANAPP QAQKPIVNQE QQAAKQEPSA NPVGQRVISR 840
  841 QEKIEYRDQD GNLLNAEQVE ALKGKVEFKT KYETRTRVID ANGNEIQLGG SGMPKVVRAP 900
  901 KASQPVAPPH PDVQGVDQET PKIPAAEEVV PQAEMSVDGE KEAEEKVAKP ASESNEATVS 960
  961 QDIEQSDDVR AAQEKIQKMV ERIQKVANNV DNLKNNVAEK AGDKVDQVEE KAEQAVEKVQ1020
 1021 EVAEPVEEKA EQVVEKVQEV AEPAKEKAEQ VVEKVQEVAE PAKEKAEQVV EKVQEVAEPA1080
 1081 KEKAEEAAEK LAEKVEEATE QSKEKIESVA DNVKEEVTEK AEQVQEKAQE AGEKAQEVVL1140
 1141 EKIDQVKEMA EEVGEKAEAK TEAKDEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle