YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85118909
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFAINDRT EEFRQIVAAA QRRQATKPGK QRLLDTAQQH AASSDAQPRR SEFARGAAEI  60
   61 GRGISATMAK LEKLAQLAKK KTLFDDRPVE INELTFVIKQ DLSSLNEKIR NLQDLSRRLH 120
  121 PKPDQEGENN KNILLLLQGK LGDVGANFKD VLEIRTKNIQ ASRSRTENFV SSVGQHAHAS 180
  181 LQQSASPLYG TPSRGTPAPG QQDLISLNPM GDQQMQLQML EEGQNTYVQQ RGQAIEAIES 240
  241 TINELGSIFG QLAAMVSEQS EMIQRIDANT EDVVENVEGA QKELLKYWSR VSSNRWLLAK 300
  301 MFGVLMIFFL LWVLIAG

Type	Start	End	Confidence
Cytoplasmic	1	295	0.85
Transmembrane Helix	296	316	0.95
Non-Cytoplasmic	317	317	0.86