YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49613122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYDPVLKTL VDDDYRLEDH LDFKKQHADI NYQKLHAQLN EINNDNIHAI LTAQEATYFL  60
   61 QTLCTPNPNQ SWKTAMFGCT DPVSSFAGNI AEAVSVSRIV MEIKGFGVTA TEYVGKNGSK 120
  121 YIKLSGYPGV RKYLDATRYL VSNQKILDIG IGTKGIESGI AAGARFCILF SGAYRAIELM 180
  181 LKDEYALTDF FVNLTMDAAK LAISIGVAWG AKAAATSVMV ATGGSVIIIA GGIFLLGVAV 240
  241 SFSLLWLDNK YKISETIIKN LKSHKKQYTP YHPDQFFHAW GRYSRG

Type	Start	End	Confidence
Cytoplasmic	1	197	0.82
Transmembrane Helix	198	216	0.58
Non-Cytoplasmic	217	225	0.46
Transmembrane Helix	226	247	0.87
Cytoplasmic	248	286	0.78