YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50121980, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIQFIIDF ILHIDVHLAE LVAQYGVWVY AILFLILFCE TGLVVTPFLP GDSLLFVAGT  60
   61 LAALPSNDLN VHTMVFLMII AAVTGDAVNY TIGRLFGEKL FSNPNSKIFR RSYLDKTHAF 120
  121 YARHGGKTII LARFVPIVRT FAPFVAGMGH MSYRHFAAYN VIGALLWVLS FTYAGYLFGD 180
  181 LPVVQENLKL LIVAIIFLSI LPGIIEIARH RRAATRGNVK

Type	Start	End	Confidence
Cytoplasmic	1	25	0.75
Transmembrane Helix	26	49	0.84
Non-Cytoplasmic	50	70	0.72
Transmembrane Helix	71	92	0.87
Cytoplasmic	93	155	0.84
Transmembrane Helix	156	177	0.92
Non-Cytoplasmic	178	187	0.80
Transmembrane Helix	188	208	0.91
Cytoplasmic	209	220	0.88