YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49612462, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	111	0.98
Transmembrane Helix	112	132	0.92
Non-Cytoplasmic	133	159	0.89
Transmembrane Helix	160	181	0.89
Cytoplasmic	182	188	0.79
Transmembrane Helix	189	209	0.93
Non-Cytoplasmic	210	226	0.95
Transmembrane Helix	227	248	0.89
Cytoplasmic	249	256	0.88
Transmembrane Helix	257	279	0.94
Non-Cytoplasmic	280	299	0.85
Transmembrane Helix	300	322	0.85
Cytoplasmic	323	341	0.80
Transmembrane Helix	342	363	0.91
Non-Cytoplasmic	364	371	0.81
Transmembrane Helix	372	392	0.85
Cytoplasmic	393	400	0.78
Transmembrane Helix	401	421	0.91
Non-Cytoplasmic	422	438	0.83
Transmembrane Helix	439	461	0.93
Cytoplasmic	462	474	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMSKVKQQD IDRLIELVGG RENIAAVTHC ITRLRFVLHD ASKAHPKNIE EMRMVKGCFT  60
   61 NAGQFQVVIG TNVDEYYKAL LATTGKGEIN KEEAKVAARQ NMSWFERSIS HFAEIFFPLL 120
  121 PALISGGLIL GARNVIGDIP MRDGQTLVQL YPTWQTVYDF LWLLGEAIFF YLPVAVCWST 180
  181 VRKMGGTPIL GIVLGITLVS PQLMNAYLIG QQTPEVWNFG WFTIEKIGYQ AQVIPSVLAG 240
  241 MALALIEIRL KKIVPDYLYL VVVPVTSLIL AVFLAHTLIG PFGRMIGDGV AWAVKAVMTG 300
  301 SFAPVGAALF GFLYAPLVIT GVHQTTLAID MQMIQSMGGT PVWPLIALSN IAQAAAVVGV 360
  361 IIVSRKANER EISVPAAISA FLGVTEPAMY GINLKYRFPM LCAMIGSAAA ALICGLYGVT 420
  421 ANGIGVGGLP GILSIKPQFW GVFALAMLVA AVISIVLTVL VYKRKSRNGT LDPA