YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTPX_ERWCT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRIALFLIT NLAVMLVFGL VLSLTGIQSS SVQGLMIMAG LFGFGGAFVS LLMSKWMALR  60
   61 SVGGEVIEQP RNETERWLVE TVRSQSQQAG IAMPQVAIYH APDINAFATG ARRDASLVAV 120
  121 STGLLQNMSR DEAEAVIAHE ISHIANGDMV TMTLVQGIVN TFVIFISRLI AQVVSGFLSG 180
  181 NRDEGESSNG NPMVYFAVAT VLELVFGILA SIITMWFSRY REFHADAGSA KLVGREKMIA 240
  241 ALQRLKTSYE PQEEGSMMAF CINGKSKSFS ELFMSHPPLD KRIEALRSGE YLK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	27	0.95
Non-Cytoplasmic	28	33	0.81
Transmembrane Helix	34	54	0.92
Cytoplasmic	55	151	0.97
Transmembrane Helix	152	171	0.89
Non-Cytoplasmic	172	193	0.86
Transmembrane Helix	194	217	0.90
Cytoplasmic	218	293	0.99