YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49611783, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVNKKVKK AVIPVAGLGT RMLPATKAIP KEMLPLVDKP LIQYVVNECI AAGINEIILV  60
   61 THSSKNSIEN HFDTSFELEA ILEKRVKRQL LEEIQSICPK HVTIMQVRQG LAKGLGHAVL 120
  121 CAHPLVGDEP VAVILPDVII DEYESDLKKD NLSEMLQRFS TTGHSQIMVE PVENVSSYGV 180
  181 VDCKGVELKA GDSAPMVGVV EKPKASEAPS NLAVVGRYVL SADIWSLLEK TPPGAGNEIQ 240
  241 LTDAIAMLME KETVEAYHLK GVSHDCGNKL GYMQAFVEYG LRHDGLGEEF AQWLQEAIDA 300
  301 EEK

Type	Start	End	Confidence
Signal Peptide	1	28	0.59
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	303	0.99