YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49611326, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.97
Transmembrane Helix	108	131	0.84
Non-Cytoplasmic	132	147	0.77
Transmembrane Helix	148	167	0.93
Cytoplasmic	168	175	0.74
Transmembrane Helix	176	197	0.86
Non-Cytoplasmic	198	207	0.89
Transmembrane Helix	208	231	0.89
Cytoplasmic	232	249	0.90
Transmembrane Helix	250	272	0.92
Non-Cytoplasmic	273	291	0.79
Transmembrane Helix	292	314	0.88
Cytoplasmic	315	329	0.76
Transmembrane Helix	330	350	0.88
Non-Cytoplasmic	351	359	0.76
Transmembrane Helix	360	380	0.89
Cytoplasmic	381	387	0.80
Transmembrane Helix	388	410	0.90
Non-Cytoplasmic	411	432	0.90
Transmembrane Helix	433	455	0.93
Cytoplasmic	456	633	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYKALASEI LDGVGGRGNI ISVMHCATRL RFKLKDSKKA DAAALKNNSG VIMVVESGGQ  60
   61 FQVVVGNHVS DVYRSLLDVS GLTDQSDSAN HEEGDEKKGN VFSRFIDIIS GIFTPLIGVM 120
  121 AASGILKGFL ALSLACGWMV ETSGTYKVLF AASDALFFFF PIVLGYTAGK KFGGNPFVTM 180
  181 VIGATLVHPS MIAEFGAMQN TGYQQLYFLG IPITFINYAS SVIPIIFSAW LASRLEKPLN 240
  241 AILHINIRNF FTPLLCLCIT VPVTFLLIGP AATWLGHMLA SGYQLIYGLN STIAGALMGA 300
  301 LWQVFVIFGL HWGLTPLMIN NLSVLGHDTM MPLLVPAVLG QAGAVLGVLL RTRDMKLKGI 360
  361 SGSAFSAAIF GITEPAVYGV TLPLKRPFIF GCVGGAMGAA ILGYFHTTIY SFGFPSIFTF 420
  421 TQVIPPTGVD NTVWAAIIGT AIAFTFAAVA TWAFGIPAQE NTAAINAPTA APQATQNPND 480
  481 ATRKQAITSP IEGTVLTLDQ VGDETFASGL MGKGIAIKPL AGRVVSPVNG TVASLFKTNH 540
  541 AIGLESEEGA EVLIHVGIDT VKLDGQYFTA HIKTGDIVKQ GDLLVEFDYQ AIEKAGYDTT 600
  601 TPVIITNSEN YVDVLPTAGN TVQEQGALLT LIR