YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49610981, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMKTQKISL AWQILIALVL GIALGAVLHE QQESRQWLIS NILSPAGDIF IRLIKMIVVP  60
   61 IVIATLVVGI AGVGDAKKLG RIGFKTILYF EIITTVAIIL GITLANVFKP GLGIDMSTLT 120
  121 AVDISQYQKT TEQVQSGSHS LVGTVLSLIP PNIFAAMAHG EMLPIIFFSV LFGLGLSSLP 180
  181 KEHRDPLLSV FRGVSETMFK VTHMIMRYAP VGVFALISVT VANFGFASLW PLAKLVMLVY 240
  241 AAIFFFALVV LGAVARLCKL RITMLIRILK DELILAYSTA SSETVLPRII EKMEAYGAPK 300
  301 SITSFVVPTG YSFNLDGSTL YQSIAAIFIA QLYGIELSIG QEIVLVLTLM LTSKGIAGVP 360
  361 GVSFVVLLAT LGSVGIPLEG LAFIAGVDRI LDMARTALNV VGNALAVLVI AKWEHQFDEK 420
  421 KAQAYEREIK GISTQPAQQG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	50	0.94
Transmembrane Helix	51	74	0.89
Cytoplasmic	75	86	0.86
Transmembrane Helix	87	108	0.92
Non-Cytoplasmic	109	154	0.96
Transmembrane Helix	155	176	0.88
Cytoplasmic	177	207	0.90
Transmembrane Helix	208	229	0.90
Non-Cytoplasmic	230	236	0.78
Transmembrane Helix	237	258	0.93
Cytoplasmic	259	355	0.69
Transmembrane Helix	356	385	0.73
Non-Cytoplasmic	386	392	0.45
Transmembrane Helix	393	411	0.52
Cytoplasmic	412	440	0.75