YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49610880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIADPTIW AGLATLVVLE LVLGIDNLIF IAILAEKLPK EQRDKARIVG LLLALIMRLG  60
   61 LLASISWLVS LTTPLFTFLE HTFSARDVIM LIGGLFLLFK ATMELNERLE GKDEDQQAQR 120
  121 KGARFWPVVA QIVVLDAIFS LDSVITAVGM TDHLLVMMSA VTIAILLMLL ASKPLTRFVA 180
  181 EHPTIVILCL SFLLMIGFSL VADAFGYHIP KGYLYAAIGF SVLIEMLNQV SLFNRRRFLS 240
  241 STVPLRQRTA EVVLRILRGN HEEAELDNQT SSMIADNTRA GREVFNIQER RMIKRVLGLA 300
  301 QRTISSIMTS RHDIESVELD TTQGALAKLL TTNQHSRLVV TDSNTSDEPL GIINVADLLQ 360
  361 QQLNREPFNP RILIRQPLVF PEQLSLLQAL EQFREGRTHF AFVVDEFGSM EGIVTLSDVM 420
  421 ETIAGNLPRE GEDRDARHSV QQNDDGSWTV NGYIPLEDLA MYVPLTLDEK REYYTLAGLL 480
  481 MEHTQRVPQV GDTLSIDNYQ FTILAVESHR IVEVRITPND EPQTDFEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.93
Transmembrane Helix	9	34	0.85
Cytoplasmic	35	47	0.94
Transmembrane Helix	48	71	0.87
Non-Cytoplasmic	72	82	0.81
Transmembrane Helix	83	102	0.92
Cytoplasmic	103	122	0.94
Transmembrane Helix	123	145	0.86
Non-Cytoplasmic	146	152	0.73
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	183	0.80
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	212	0.78
Transmembrane Helix	213	232	0.93
Cytoplasmic	233	528	0.97