YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49610708, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSLIVNNL AGLMMFTSLM VIGVKRPTAS CWLYSLQALI LVLLFLTLSY TLDAHELRTW  60
   61 AISAFFTKVV LVPAILYFAF RTMRDPAHEG SVISLPVLMI LAAAIVILCW FVAEPVQLPL 120
  121 LATLKPALAV SLGHFMVGLL CIVTQRNILK QVFGYCLMEN GSHLTLALLA SKAPELVEIG 180
  181 IATDAIFAVI IMTILARKIW RTLNTLSVDQ LTALKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.80
Transmembrane Helix	5	24	0.82
Cytoplasmic	25	30	0.84
Transmembrane Helix	31	52	0.91
Non-Cytoplasmic	53	59	0.79
Transmembrane Helix	60	80	0.95
Cytoplasmic	81	91	0.83
Transmembrane Helix	92	113	0.95
Non-Cytoplasmic	114	121	0.81
Transmembrane Helix	122	143	0.90
Cytoplasmic	144	151	0.78
Transmembrane Helix	152	171	0.70
Non-Cytoplasmic	172	178	0.61
Transmembrane Helix	179	196	0.88
Cytoplasmic	197	216	0.80