YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50120081, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.97
Transmembrane Helix	16	38	0.94
Cytoplasmic	39	56	0.93
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	101	0.96
Transmembrane Helix	102	127	0.87
Cytoplasmic	128	143	0.79
Transmembrane Helix	144	163	0.91
Non-Cytoplasmic	164	190	0.91
Transmembrane Helix	191	213	0.92
Cytoplasmic	214	229	0.89
Transmembrane Helix	230	254	0.89
Non-Cytoplasmic	255	277	0.93
Transmembrane Helix	278	299	0.85
Cytoplasmic	300	310	0.75
Transmembrane Helix	311	335	0.86
Non-Cytoplasmic	336	345	0.82
Transmembrane Helix	346	366	0.93
Cytoplasmic	367	381	0.85
Transmembrane Helix	382	403	0.92
Non-Cytoplasmic	404	417	0.80
Transmembrane Helix	418	440	0.92
Cytoplasmic	441	455	0.94
Transmembrane Helix	456	476	0.94
Non-Cytoplasmic	477	492	0.85
Transmembrane Helix	493	514	0.93
Cytoplasmic	515	588	0.93
Transmembrane Helix	589	606	0.70
Non-Cytoplasmic	607	607	0.36
Transmembrane Helix	608	629	0.76
Cytoplasmic	630	663	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGKLTLDAV PYHEPIIMVT VAAIIVGGLG LLAAITYFGK WKWLWAEWFT SVDHKKIGIM  60
   61 YIIVGLVMMI RGFADAIMMR GQQVLASAGQ EGFLNAHHYD QIFTAHGVIM IFFVATPFVV 120
  121 GLMNLAVPLQ IGARDVAFPF LNSLSFWLFV AGVILINLSL GVGEFAQTGW VAYPPLSGKE 180
  181 YSPGVGVDYW IWSLQISGIG TTLTGVNFFA TILKMRAPGM SLMKMPVFTW TALCTNVLII 240
  241 AAFPILTVTI ALLTLDRYLG THFFTNDMGG NMMMYINLIW AWGHPEVYIL VLPIFGVYSE 300
  301 VVATFCRKRL FGYTSLVWAT IAITVLSFIV WLHHFFTMGS GANVNAFFGI ATMIISIPTG 360
  361 VKIFNWLFTM YQGRIQPHST MLWTTGFIIT FTIGGMTGVL LAVPGANFVL HNSLFLIAHF 420
  421 HNVIIGGVVF GCFAGITYWF PKAFGFTLNE TWGKRAFWFW IIGFFVAFMP LYVLGFMGMT 480
  481 RRLSQQINPE FHALLVVASI GAVLIGIGVL CQVIQFYVSI RDRDQNRDLT GDPWGGRTLE 540
  541 WATSSPAPFY NFAIVPHVDE RDAFWEAKEK GEAYKRPASY EEIHMPKNTG AGVIISAFSL 600
  601 VFGFAMIWHI WWLAIAGFAG IIVTWIVHSF NQDVDYYVPV KEIEQIENQN FDQLSKAGVK 660
  661 HVN