YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50119229, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRYRRHGNW IIWLSFLIAM VLQIMPWPDE IYMFRPSWLT LFLIYWVMAL PHRVNVGTGF  60
   61 VLGLIMDLIL GSTLGVRALA LSIVAYLVAF KFQLFRNMAL WQQALIVMLL SLLMDLTVFW 120
  121 AEFLVINVSF RPETFWNSVV DGVLWPWLFL LMRKIRRQFT VQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	27	0.94
Non-Cytoplasmic	28	55	0.60
Transmembrane Helix	56	90	0.68
Cytoplasmic	91	99	0.61
Transmembrane Helix	100	124	0.83
Non-Cytoplasmic	125	133	0.61
Transmembrane Helix	134	151	0.82
Cytoplasmic	152	162	0.74