YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50119010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.79
Transmembrane Helix	10	32	0.83
Cytoplasmic	33	51	0.86
Transmembrane Helix	52	77	0.88
Non-Cytoplasmic	78	90	0.82
Transmembrane Helix	91	111	0.91
Cytoplasmic	112	121	0.65
Transmembrane Helix	122	143	0.84
Non-Cytoplasmic	144	154	0.85
Transmembrane Helix	155	177	0.93
Cytoplasmic	178	206	0.95
Transmembrane Helix	207	227	0.92
Non-Cytoplasmic	228	233	0.86
Transmembrane Helix	234	254	0.95
Cytoplasmic	255	382	0.96
Transmembrane Helix	383	403	0.91
Non-Cytoplasmic	404	445	0.70
Transmembrane Helix	446	467	0.66
Cytoplasmic	468	474	0.71
Transmembrane Helix	475	498	0.91
Non-Cytoplasmic	499	501	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLFAGLDY YTGLMLILAL LFVLMYEAIN GFHDTANAVA TVIYTRAMRA EFAVVMAGVF  60
   61 NFFGVLLGGL SVAYAIVHLL PTDLLLNVSS AHGLAMVFSM LLAAIIWNLG TWYFGIPASS 120
  121 SHTLIGAIIG IGLTNALLTD TSIVDALNVP KMISIFLSLL LSPIVGMVVA GLMLLVLRRF 180
  181 WNNSKKRKRV HLTPVDREKQ DGKRKPPFWT RTALILSAIG VSFSHGANDG QKGIGLIMLV 240
  241 LIGVAPAGFI VNMNASGYDI SRTRDAVVNL QEYYKQHGDA LTHVIDLSPP VIPVPESTIP 300
  301 GNGQKEFHCD SSRVMIAIER TQGLLNNLKS YDQLNPDDRS RVRRLLMCIA DTMDRVVKLP 360
  361 ETSGEDKRYL NNLRKDMLQT VEYAPLWIIV AVALALSLGT MVGWKRVAVT IGEKIGKKGM 420
  421 TYAQGVSAQV TAALSIGVAS YTGMPVSTTH VLSSAVAGTM IADGGGVQGK TIRSILLAWV 480
  481 LTLPVSMLMS GTLYWLALKL I