YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32416720, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.93
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	1084	0.98
Transmembrane Helix	1085	1108	0.76
Cytoplasmic	1109	1949	0.54
Transmembrane Helix	1950	1970	0.51
Non-Cytoplasmic	1971	1983	0.75
Transmembrane Helix	1984	2001	0.89
Cytoplasmic	2002	2010	0.80
Transmembrane Helix	2011	2032	0.91
Non-Cytoplasmic	2033	2042	0.80
Transmembrane Helix	2043	2063	0.92
Cytoplasmic	2064	2073	0.89
Transmembrane Helix	2074	2097	0.89
Non-Cytoplasmic	2098	2116	0.90
Transmembrane Helix	2117	2140	0.93
Cytoplasmic	2141	2161	0.88
Transmembrane Helix	2162	2180	0.91
Non-Cytoplasmic	2181	2197	0.86
Transmembrane Helix	2198	2219	0.92
Cytoplasmic	2220	2226	0.82
Transmembrane Helix	2227	2244	0.89
Non-Cytoplasmic	2245	2257	0.69
Transmembrane Helix	2258	2279	0.77
Cytoplasmic	2280	2298	0.72
Transmembrane Helix	2299	2320	0.89
Non-Cytoplasmic	2321	2342	0.92
Transmembrane Helix	2343	2366	0.88
Cytoplasmic	2367	2374	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLALFSIR ALFTIATTFT LTDALRYDAQ EIEYNLNRNK TATSPLDYWG DRTEDDPNFT  60
   61 YFPSPKNWRV PFYTVFVDRW VNGEPDNDNA NGTLFEADIM SNQLRFGGDV DGIIDSLDYI 120
  121 QGQGVKGIYI AGSPFINQPW GADSYSPLDL TLLDKHFGNI KKWQEAIDAI HDHGMWVIMD 180
  181 NTMATMGDLI GFEGYLNTST PFLVEEHKVL WKSDRRYLDF DIGNTYNKTC DYPEFWYEDG 240
  241 KRIKPDGLKG CYDSDFDQYG DIEAFGVFPD WQRQLAKFAS VQDRLREWKP DVIARLARFS 300
  301 CMTIGMLDVD GFRIDKAVQV TVDAQAHFSS AMRKCAKEKF NKDNFIVVGE ITSGNTLGSI 360
  361 YLGRGREPEP AEELSDDPVK ALTLGNATTD TSKYFVREKG NSALDAGAFH YSVYRFMTRF 420
  421 LGMSGNLRAG YDLPTDWIET WHEMIATNDF WNANTGEFDP RHLYGTSNQD VFRWPAIEKG 480
  481 TERMLLAYFI TTFLLPGAPL MYYGEEQELY ALDGTAENYV YGRQAMAPSP AWMAHGCFSL 540
  541 ENDLYVDWPV TKAKDGCKDK SVGWDHRNPA APVRNILKNM FAMRNSSQLG VLEHGWLLEK 600
  601 LSNQTDFTLL KGSGDPTERG IWSVVRGLFP GVQDKLKDKP VWFVYHNREN TTTYKFNCDQ 660
  661 REGAFLSPFD AGAKVKNLMD DGDVITLSSS NVKNNYTNSG KNMGCLSEVT LNPFEFRVYV 720
  721 DDPEDRWMQP APMITKFTPG HDVPIDSTKA NGRIDISFEF NTEMDCDSVT KALTVNLTQD 780
  781 GVNDPTQLSW TKPNCELFTP QDADKIKYTG AINSAWRWNA TLTNVADGII KLTLDPTAAA 840
  841 KGGKVTKGTR DHFLLRLGKP SNPVVWGMDA TYNWDLLQSV SNNLYRIKHN APGATKWRYS 900
  901 TNFGSTWSKW VDYDGKETSV TGQQWSGTAL QAWEGKHIQV QYFSKPLGSS AFIQHSDKGI 960
  961 DYQRVFPHIK LHGPFNKWGY DTGLPGSMDL VGHNTWSLHY MYEWPANFQL NIWGINPDNQ1020
 1021 PDVSFIFGDI DGDHVVDRLP PSSLANNVIN ITDPPPTPAL AWKVFYNDAT WTYHLEPAGN1080
 1081 MNVQIALFWL FAILPVALAC LAGWIYVTSF YQVKVNKSGF ATKGWMPLKI GNLSKLNIAN1140
 1141 VGKGVEMNAI TPPPPSSALS PLGAAGGRRT VLIATMEYNI DDFKIKIKIG GLGVMAQLMA1200
 1201 NALHHMDIVW VIPVVGDVDY PLEKMQKAEP MYVDVMGQPY EIEVYYYVVK NITYVLLDAP1260
 1261 IFRKQTKADP YIARMDDIES AILYAAWNYC IAESIRRFPV DIYHINDYHG AAAPLYLLPQ1320
 1321 TIPVCLSLHN AEFQGMWPMR TPEEAKEVCE VFNLPPEVVK DYVQYGSVFN LLHAGASYLR1380
 1381 IHQRGFGAVG VSRKYGDRSL ARYPIFWSLK NIGQLPNPDP SDTADWDPSQ DANDQAKGVE1440
 1441 VDQAAEEKRG EYRRQAQEWA GLEVDPSAEL FVFVGRWSLQ KGVDLIADLF PSILEKYPKT1500
 1501 QLIAVGPVID LYGRFAALKL EKLMQKYPKR VFSKPEFTSL PPYIFTGAEF ALIPSRDEPF1560
 1561 GLVAVEFGRK GALGVGARVG GLGQMPGFWY TVESMTPSHL IQQFRQAIES ALACKHNKRA1620
 1621 VMRAWSAKQR FPVAQWVKQL DDLYSESIRI HIKEQKKKKL EVLSPGLTVP GASSRASYAD1680
 1681 PGSGRSSPGP LAVPSRPVTP TLRDLASPDL PTPGAPWAGG RSESPGARDS TASSIAGNFY1740
 1741 LQPGGAREST MSVDSFAIRA QNGGPMSPGL GPDGGLAFPR PAFTQAHRNS SLLSLPDVVG1800
 1801 DRHDLKLQKV DQFFNDTNGE YYAEFEQMLE ALTASNSSSD LCIETFLKRS EKEWFARYRD1860
 1861 AKLGRHRDAS RMGRGGSGRP ESRGGDRSES VVSRGRQPMR SATPSGLARS VFEESPPGGR1920
 1921 SDYDDEFLLG DGYQAPTGLK KTLSVRIGDW PLYSFFLALG QIISVNSYQI VLLSGSQAQT1980
 1981 PEKLYTVGGV YIATSLMWWG MERNFKSVYA LSAPWFFFGL AFLLLGVAPF IGDWKVADSV2040
 2041 TSAATAFYAA GASHGALSFA LNFGDEGGAP TRQWITRALI VSGIAQVYSL GLWYWGATVS2100
 2101 SEAQTMTKFI GESGVPLALV ICVPVAIFLW AIGAILYVGL PDFYRQSPAT IPGFYISLYR2160
 2161 RKIVPWFFVM IILQNYWLSA PYGRSWSFLF STQFIPNWGI FLMALGFFVV LWSIVLYGFS2220
 2221 YFSDEHTWLL PIFAIGLCAP RWAQEMWACS GIGWYLPWAG GPVGSAVLSR CLWLWLGLLD2280
 2281 NIQGVGLGMM LLATLTRQHV LVVLIGAQVI GSMFTLIGRA TSPNALSPNT TFPDFSQGLY2340
 2341 PGIASPYFWV CLIFQLIIPV GFFKFFRKEQ VAKP