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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHO2_NEUCR
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSAADPFA ARLNSDVRQR HPTASATSKN VEGTSQQKQQ QQQQQSEANA AASRVKKTYG  60
   61 KTPDGTVFVV PTTHDMVTQL LDPREPKNLS DVAVLAIIAL HFLAAYYLPW GVKRPLFAAI 120
  121 FMFWRLAYNV GIGYLLTIQS KYKLLVTWAK RWKLFENPAT GKNPRPWLYN LLKKELETKI 180
  181 PQDYKFEEAP IEYNTWLTFR RVVDLILMCD FISYCLFAIV CAHKPDGEGL FMCFARWAAG 240
  241 ITLVGFNLWV KLDAHRVVKD YAWYWGDFFY LIEQELTFDG VFELAPHPMY SIGYAGYYGI 300
  301 SMMAASYDVL FISIIAHAAQ FAFLVIVENP HIEKTYNPPQ PRVRCESEAG SQLQEFASEY 360
  361 SVPSTTGRHD NTPLPVHNLI GLKNLDFFRI TDVAIVLLCA YLAVVTMVTP NTRFYQALFV 420
  421 LHALAWRLWY SAGLGVILTM QSEEKMFTRH FLKYGESVGE AWRQWKGIYH LSNCLCHASF 480
  481 IAASYKMYEF PADWTYGWAL LKHVVGLSLI ALQVWTATSI YESLGEFGWF YGDFFFDSKR 540
  541 QLTYTSIYRF LNNPERVFGT AGLWGAALIT WSRAIFLMAL AGHFLTLAFL AYVEKPHMQK 600
  601 VYGRNLRDDA GVTKFIKRSL PPPVTEWQQS IDKVLDETKH FIDEFVDAAR SRLATGSSTI 660
  661 VKDTSALFNK YPARLTLSKI SPDLAGYDPK HYGLSLAGTR VVGTNEKATG KESPNARVLK 720
  721 DVKTQAFEYG APIRVKWTAP ANHSKKDWVG LYMVTDNRSR EVTEVPSLGR WVPTNPGEYD 780
  781 TTTDQGILVW DQPVEKKSED TDLVEGEMVF EGDKLWWTQG VFEFRYHHGG GHHVMSISEP 840
  841 FEIQIPKFDD EHMGVDISGE VGERAVEAAL LPVIRNCLDR DPDIAPSNAE ERFGGHVERD 900
  901 GKYARRVVYA IRHMFGIDFA PAVVLADGNV RRLAWRICHA KEVLAPFSMS HTNGRTTPVD 960
  961 SKFSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle