YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD4_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	463	0.97
Transmembrane Helix	464	487	0.82
Cytoplasmic	488	495	0.86
Transmembrane Helix	496	515	0.92
Non-Cytoplasmic	516	521	0.68
Transmembrane Helix	522	539	0.68
Cytoplasmic	540	551	0.64
Transmembrane Helix	552	575	0.82
Non-Cytoplasmic	576	581	0.62
Transmembrane Helix	582	604	0.82
Cytoplasmic	605	612	0.58
Transmembrane Helix	613	633	0.91
Non-Cytoplasmic	634	639	0.60
Transmembrane Helix	640	658	0.96
Cytoplasmic	659	677	0.61
Transmembrane Helix	678	702	0.81
Non-Cytoplasmic	703	714	0.63
Transmembrane Helix	715	734	0.90
Cytoplasmic	735	739	0.67
Transmembrane Helix	740	760	0.82
Non-Cytoplasmic	761	763	0.51
Transmembrane Helix	764	780	0.69
Cytoplasmic	781	822	0.79
Transmembrane Helix	823	844	0.88
Non-Cytoplasmic	845	864	0.73
Transmembrane Helix	865	886	0.88
Cytoplasmic	887	894	0.67
Transmembrane Helix	895	915	0.94
Non-Cytoplasmic	916	926	0.69
Transmembrane Helix	927	945	0.86
Cytoplasmic	946	996	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFPRFRFL AIAVIFHFAY IFSIFDIYFV SPIETGMRLF NVQRPPNRSA PADRLVLFVG  60
   61 DGLRADKALQ SHPEPYPKSD ADLTPRPLAP YLRSKILEQG TFGVSHTRVP TESRPGHVAL 120
  121 IAGLYEDVSA VTTGWKLNPV NFDSLFNRSR HTWSWGSPDI LPMFEQGAVP GRVDAYTYGH 180
  181 EFEDFSSDAT QLDLWVFDHV KDFFAEARRN KTLAEALRQD KIVFFLHLLG LDTTGHSYRP 240
  241 YSKEYLNNIK IVDQGVKEVA ELFRDFYRDG RTAFVFTADH GMSDWGSHGD GHPDNTRTPL 300
  301 IVWGSGVAKP QLYPGEVAPG HDEYSADWNL DHVRRHDVAQ ADVAALMSYL VGVEFPANSV 360
  361 GELPLSYLAA DIKEKAEASL VNVQGILEQY RVKEEKKKAT ELKYRPYQPF GENGLSPERR 420
  421 VAEIRQLIDA GRYEEAIEES AALMKVGLGG LRYLQTYDWL FLRALITIGY LGWIAYALTT 480
  481 VVDLHVLHGR VRPSRTLGGG LFFTSVLVAL YASLVISKSP LTYYVYAFFP VFFWEEVYAH 540
  541 RESLAAGRKE LLGHINSGGS VASFVLNSAL YVGVIESLAL GYIHREILSV LFVLGSFWPF 600
  601 THGLSFLKKH GALSATWFLA CIAMSTFTLL PAMKAENVNL ITIGGVLMVV IGLLYLIFED 660
  661 FVLADFSWNA KPTSRNHLSR SLVGIQVGLT VLSIIITRSS ALSLQAKQGL PRGNQIMGWV 720
  721 TLVASLLMPL AYRLRPNNHY MHRILVIFLT CAPTFVILTI SYEGLFYLVF SALLVSWVRL 780
  781 EHAVQKFTSS KAPQTAATKK PTTTTESHLP APFRPLTLHD ARVALFFFIL LQSAFFSTGN 840
  841 VASVSSFSLD SVYRLIPIFD PFSQGAMLIL KLMIPFALIS ANLGILNKRL GVAPSALFMV 900
  901 VMGISDILTL YFFWVVKDEG SWLEIGSTIS HFVIASLLCV FVSALEPVSA AFIAGVEVGE 960
  961 ESELKEEGKV AEKVVEKVNE AVEGLVSGGD GGGDES