YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85107726
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWDLTRRRW MRRLNSKYIF DRIPLLHAIV FIIEMTIIAR LTSRFNQFYN ERPVLTMMVT  60
   61 NAVLAGVADT VAQSITAVRQ RAVRKYPPGR GPNARDDFVA YEIHELDRKN PLNEQELIPE 120
  121 SRDLPPPFDF ERLTRFMAFG FCMAPLQFKW FGFLERCFPI TKKNAYQSAL KRVAFDQLIF 180
  181 APFGLACFFT AMTLAEGGGK RGVYEKMRDL YVPTLKANYV LWPAVQVINF RLMPVSLQLP 240
  241 FVSTVGIAWT AYLSLTNAAE DVQHTTPHRA PGSPDIRLS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.99
Transmembrane Helix	18	39	0.93
Non-Cytoplasmic	40	56	0.85
Transmembrane Helix	57	77	0.53
Cytoplasmic	78	172	0.52
Transmembrane Helix	173	195	0.79
Non-Cytoplasmic	196	231	0.58
Transmembrane Helix	232	253	0.62
Cytoplasmic	254	279	0.65