YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85107027
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	178	0.98
Transmembrane Helix	179	200	0.88
Non-Cytoplasmic	201	205	0.81
Transmembrane Helix	206	227	0.92
Cytoplasmic	228	238	0.84
Transmembrane Helix	239	259	0.94
Non-Cytoplasmic	260	268	0.76
Transmembrane Helix	269	292	0.89
Cytoplasmic	293	301	0.83
Transmembrane Helix	302	324	0.86
Non-Cytoplasmic	325	335	0.85
Transmembrane Helix	336	356	0.90
Cytoplasmic	357	440	0.86
Transmembrane Helix	441	463	0.85
Non-Cytoplasmic	464	478	0.77
Transmembrane Helix	479	502	0.61
Cytoplasmic	503	509	0.59
Transmembrane Helix	510	534	0.85
Non-Cytoplasmic	535	543	0.54
Transmembrane Helix	544	564	0.90
Cytoplasmic	565	569	0.60
Transmembrane Helix	570	591	0.87
Non-Cytoplasmic	592	603	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNNYRVRQ EAHRVSRDSN SIMNPWRNKR SSTWDVPESQ RYSQPPMAHE GLDDALPIKH  60
   61 SVTAPSRTSN GYDSANGEPS YNPKNIEMQD MEPASQMTGL TGDTNVESAQ ASAGSAHQRD 120
  121 GSLGLVRKRT VGVNDSRTEL NGAGQKVAEE EKKKKQRTFF KHLQPKEPFT VGNQIRRTLL 180
  181 NSWLNVLLVA APIGIAINYV EAVPRVAVFV VNFIAIIPLA AMLGFATEEI ALRTGEVMGG 240
  241 LLNASFGNAV ELIVAVIALT HDEIVVVQTS LIGSILSNLL LVMGMCFFCG GLNRQEQYFN 300
  301 TTVAQTAASL LALAVASVIV PTVFDMAADT PPEKVAQISR GVSIILLFVY GGYLLFQLKT 360
  361 HSSVFAEESQ KVAAKPFNFR GGHDLKDGAI AQGLVGPAGM VGGHAVPTQD NNENIRHHLD 420
  421 TAPHQEEEDE EEEGEEPQLH FIVAVATLVI CTVIIAFCAE YMVDGISAIT DGDKVSKEFV 480
  481 GLILLPIVGN AAEHATAVTV AIKDKMDLAI GVAVGSSMQV ALFVIPLLVI IGWGMGIEDM 540
  541 SLSFDTFQVA VMFVSVLLVN YLIADGKSHW LEGMLLICLY LIVAVCAWSQ NNLMKMETMP 600
  601 DFD