YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FEOB_STAAW
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	279	0.93
Transmembrane Helix	280	301	0.86
Non-Cytoplasmic	302	310	0.81
Transmembrane Helix	311	331	0.60
Cytoplasmic	332	340	0.56
Transmembrane Helix	341	365	0.88
Non-Cytoplasmic	366	391	0.66
Transmembrane Helix	392	410	0.76
Cytoplasmic	411	419	0.84
Transmembrane Helix	420	442	0.86
Non-Cytoplasmic	443	451	0.74
Transmembrane Helix	452	473	0.91
Cytoplasmic	474	509	0.93
Transmembrane Helix	510	530	0.90
Non-Cytoplasmic	531	543	0.76
Transmembrane Helix	544	564	0.88
Cytoplasmic	565	573	0.65
Transmembrane Helix	574	596	0.78
Non-Cytoplasmic	597	605	0.80
Transmembrane Helix	606	628	0.91
Cytoplasmic	629	636	0.89
Transmembrane Helix	637	659	0.90
Non-Cytoplasmic	660	664	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENYCILGNP NVGKTSLFNA LTGSYEYIGN WSGVTVEKKV GKLKENVGQL IDLPGTYDLS  60
   61 PISKDETVVT DYLLNDSFSG IINIVDASQL KRNMQLTVQL LELNQPIYIG LNMIDVATKR 120
  121 GIKIDYHKLM KKLKTPIFPV VARTGKGTKH LLGEIKHLGE GYQPHFKINY GEKIEETIKN 180
  181 MCQIIMTETS HDKYQARFIA IQFLLNNMQI ANELNSEVVN KLSSLRDQVD KQVEAVSVRR 240
  241 EMERIRNHYI ETLLQDVVTY PDEDKQYFSS RIDKILTHKY IGMPIFLAIM WLIFQTTFTW 300
  301 IGTPLSDQLD AFIGGTFTDS VKTIMNYLGV IPFLQDLITD GIIAGVGSVL VFVPQIVVLF 360
  361 FFISLLEDSG YMARIAVLMD RIMESFGLSG KSFIPMIIGF GCNVPSIMAA RSIENEKERL 420
  421 TTILIAPFMS CSARLPVYAL FVGIFFKENQ SLVVLSLYVL GIIMAFLVST VLTKTILKND 480
  481 NAIFIVELPT YRVPSIKTLW RSTWEKAKGF VRKAGTFIFG GSVVIWLLSY VGPHGINVNI 540
  541 NQSFLHMVGS FFGMLVQPLG FGTWQAGATL VPGFLAKEVI VSSMAIIYSS GDAGLVNVIQ 600
  601 NQFTPLSAYA FMIFILLYIP CVSTVAAIRK ETYSWKWTAL AVVYPLVTAY VLTFIFYQIG 660
  661 HLFV